PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Carubv10011014m

Common Name

CARUB_v10011014mg

Organism

Capsella rubella

Taxonomic ID

81985

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella

Family

MYB

Protein Properties

Length: 258aa MW: 29727.6 Da PI: 7.0194

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Carubv10011014m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l+ ++++lG +W++ +r+ g++R++k+c++rw++yl Carubv10011014m 14 KGEWTAEEDRRLIAYINELGITDWRSLPRRAGLNRCGKSCRLRWLNYL 61 799*******************************************97 PP
2	Myb_DNA-binding	56.3	7.1e-18	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T++Ede +++ ++ lG++ W++Ia+ m+ +Rt++++k++w++ Carubv10011014m 67 RGKFTPQEDEAIIKFHAFLGNR-WAAIAQLMQ-NRTDNDIKNHWNSC 111 89******************.*****.*********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.426	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	3.71E-29	11	108	IPR009057	Homeodomain-like
SMART	SM00717	4.8E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-15	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.0E-22	15	68	IPR009057	Homeodomain-like
CDD	cd00167	1.22E-9	16	61	No hit	No description
PROSITE profile	PS51294	25.646	62	116	IPR017930	Myb domain
SMART	SM00717	2.8E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	3.1E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.45E-9	69	109	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.6E-25	69	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MGRKTWFDVA GMKKGEWTAE EDRRLIAYIN ELGITDWRSL PRRAGLNRCG KSCRLRWLNY 60 LRPGIRRGKF TPQEDEAIIK FHAFLGNRWA AIAQLMQNRT DNDIKNHWNS CLKKRLERNG 120 INPMTHEPII KHLTVKTNKE DFGSTSTTTS SSMESSPSSG SARILNKLAA GISSRQHSLD 180 RIKYILSNPI IISSDQVEEG RELDMDHKID GGEEEDDIQI WDEEEVRRLM GIHVMDYEMT 240 SYDSVMYEST HILDHLF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-26	9	117	2	109	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006303555.1	0.0	hypothetical protein CARUB_v10011014mg
TrEMBL	R0IHV4	0.0	R0IHV4_9BRAS; Uncharacterized protein
STRING	fgenesh1_pg.C_scaffold_1001691	1e-136	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18710.1	1e-118	myb domain protein 47

Link Out ? help Back to Top
Phytozome	Carubv10011014m
Entrez Gene	17898586